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Differential Expression Analysis

Currently, fold change analaysis is available for differential expressions analysis. More analysis modules will be available soon.

Reference experiment / slide:
Denominator of the fold calculation, B
  1: cyclops root 3w uninocul   2: cyclops root 3w inocul
  3: cyclops root+nodule 3w inocul21   4: har1 root 3w inocul3
  5: har1 root 3w uninocul   6: har1 shoot 3w inocul3
  7: har1 shoot 3w uninocul   8: L.burttii_Ctrol
  9: L.burttii_Salt   10: L.corniculatus_Ctrol
  11: L.corniculatus_Salt   12: L.filicaulis_Ctrol
  13: L.filicaulis_Salt   14: L.glaber_Ctrol
  15: L.glaber_Salt   16: L.japonicus Gifu_Ctrol
  17: L.japonicus Gifu_Salt   18: L.japonicus MG20_Ctrol
  19: L.japonicus MG20_Salt   20: L.uliginosus_Ctrol
  21: L.uliginosus_Salt   22: Fl
  23: Ljgln2-2 Control1   24: Ljgln2-2 Drought1
  25: Leaf   26: Root0h (uninoculated_root)
  27: Nod21 (nodule 21dpi)   28: Pod10d
  29: Pod14d   30: Pod20
  31: Pt   32: Root
  33: Seed10d   34: Seed12d
  35: Seed14d   36: Seed16d
  37: Seed20d   38: Stem
  39: nfr1 rootSZ 3w inocul1   40: nfr1 rootSZ 3w uninocul
  41: nfr5 rootSZ 3w inocul1   42: nfr5 rootSZ 3w uninocul1
  43: nin rootSZ 3w inocul1   44: nin rootSZ 3w uninocul
  45: nup133 rootSZ 3w inocul1   46: nup133 rootSZ 3w uninocul
  47: sen1 nodule 3w inocul21   48: sen1 root 3w uninocul
  49: Shoot 0mM sodiumChloride   50: Shoot 100mM sodiumChloride Gradual
  51: Shoot 150mM sodiumChloride Gradual   52: Shoot 25mM sodiumChloride Initial
  53: Shoot 50mM sodiumChloride Gradual   54: Shoot 50mM sodiumChloride Initial
  55: Shoot 75mM sodiumChloride Initial   56: sst1 nodule 3w inocul21
  57: sst1 root 3w uninocul   58: WT control1
  59: WT Drought1   60: WT flower 13w 5mM nitrate
  61: WT leaf 6w 5mM nitrate   62: WT nodule 3w inocul14
  63: WT nodule 3w inocul21   64: WT root 3w 5mM nitrate
  65: WT root 3w inocul1   66: WT root 3w inocul3
  67: WT Root 3w nodC inocul1   68: WT root 3w uninocul
  69: WT root 6w 5mM nitrate   70: WT root tip 3w uninocul
  71: WT root+nodule 3w inocul21   72: WT root+nodule 3w inocul7
  73: WT rootSZ 3w inocul1   74: WT rootSZ 3w Nod inocul1 (Nod_factor)
  75: WT rootSZ 3w uninocul   76: WT shoot 3w 5mM nitrate
  77: WT shoot 3w inocul3   78: WT shoot 3w uninocul
  79: WT stem 6w 5mM Nitrate   80: root_4dpi control
  81: root_4dpi mycorrhized   82: root_28dpi control
  83: root_28dpi mycorrhized
Target experiments / slides:
Numerators of the fold calculation, A.

Fold change is calculated as A/B
Select all Clear selections
  1: cyclops root 3w uninocul   2: cyclops root 3w inocul
  3: cyclops root+nodule 3w inocul21   4: har1 root 3w inocul3
  5: har1 root 3w uninocul   6: har1 shoot 3w inocul3
  7: har1 shoot 3w uninocul   8: L.burttii_Ctrol
  9: L.burttii_Salt   10: L.corniculatus_Ctrol
  11: L.corniculatus_Salt   12: L.filicaulis_Ctrol
  13: L.filicaulis_Salt   14: L.glaber_Ctrol
  15: L.glaber_Salt   16: L.japonicus Gifu_Ctrol
  17: L.japonicus Gifu_Salt   18: L.japonicus MG20_Ctrol
  19: L.japonicus MG20_Salt   20: L.uliginosus_Ctrol
  21: L.uliginosus_Salt   22: Fl
  23: Ljgln2-2 Control1   24: Ljgln2-2 Drought1
  25: Leaf   26: Root0h (uninoculated_root)
  27: Nod21 (nodule 21dpi)   28: Pod10d
  29: Pod14d   30: Pod20
  31: Pt   32: Root
  33: Seed10d   34: Seed12d
  35: Seed14d   36: Seed16d
  37: Seed20d   38: Stem
  39: nfr1 rootSZ 3w inocul1   40: nfr1 rootSZ 3w uninocul
  41: nfr5 rootSZ 3w inocul1   42: nfr5 rootSZ 3w uninocul1
  43: nin rootSZ 3w inocul1   44: nin rootSZ 3w uninocul
  45: nup133 rootSZ 3w inocul1   46: nup133 rootSZ 3w uninocul
  47: sen1 nodule 3w inocul21   48: sen1 root 3w uninocul
  49: Shoot 0mM sodiumChloride   50: Shoot 100mM sodiumChloride Gradual
  51: Shoot 150mM sodiumChloride Gradual   52: Shoot 25mM sodiumChloride Initial
  53: Shoot 50mM sodiumChloride Gradual   54: Shoot 50mM sodiumChloride Initial
  55: Shoot 75mM sodiumChloride Initial   56: sst1 nodule 3w inocul21
  57: sst1 root 3w uninocul   58: WT control1
  59: WT Drought1   60: WT flower 13w 5mM nitrate
  61: WT leaf 6w 5mM nitrate   62: WT nodule 3w inocul14
  63: WT nodule 3w inocul21   64: WT root 3w 5mM nitrate
  65: WT root 3w inocul1   66: WT root 3w inocul3
  67: WT Root 3w nodC inocul1   68: WT root 3w uninocul
  69: WT root 6w 5mM nitrate   70: WT root tip 3w uninocul
  71: WT root+nodule 3w inocul21   72: WT root+nodule 3w inocul7
  73: WT rootSZ 3w inocul1   74: WT rootSZ 3w Nod inocul1 (Nod_factor)
  75: WT rootSZ 3w uninocul   76: WT shoot 3w 5mM nitrate
  77: WT shoot 3w inocul3   78: WT shoot 3w uninocul
  79: WT stem 6w 5mM Nitrate   80: root_4dpi control
  81: root_4dpi mycorrhized   82: root_28dpi control
  83: root_28dpi mycorrhized
Search criteria: Fold change(s) A/B , or custom value: ,
in of the target experiments (slides), over the reference experiment (slide).
 




 
         
       
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